관심 갖고 답변 주셔서 감사 드립니다.
Code:
sudo dpkg --pending --configure
라고 터미날 창에서 한벌 실행해 보세요…
그리고 위에 yes 로 답하지 말고 no 로 해서 수작업을 답도 해보세요…(해보셨을듯 싶지만…)
그래도 계속 pending 된 패키지로 남아 있다면… 녀석을 과감히 제거 하고 다른 버전 등을 설치 해야 할듯 싶습니다…
- yes, o, no 전부 다 해 보았는데, 설치 중 halt 상태는 - 심지어는 12시간 두면 그냥 그 상태로 멈춰 있는 - 그대로 입니다.
- pending 된 채로 있다가 다른 프로그램 설치할 때 항상 방해하는데, 제거를 하자고 하면, 설치가 안되어 있기 때문에 제거가 안된다고 나옵니다.
- 아래는 sudo dpkg --pending --configure을 하고 나서, 나온 것을 갈무리한 것입니다.
ygchai@main:~$ sudo dpkg --pending --configure
Setting up bio-linux-genquery (2.2.3-1) …
Pulling in some needed Perl modules not in Debian
CPAN is the world-wide archive of perl resources. It consists of about
300 sites that all replicate the same contents around the globe. Many
countries have at least one CPAN site already. The resources found on
CPAN are easily accessible with the CPAN.pm module. If you want to use
CPAN.pm, lots of things have to be configured. Fortunately, most of
them can be determined automatically. If you prefer the automatic
configuration, answer ‘yes’ below.
If you prefer to enter a dialog instead, you can answer ‘no’ to this
question and I’ll let you configure in small steps one thing after the
other. (Note: you can revisit this dialog anytime later by typing ‘o
conf init’ at the cpan prompt.)
Would you like me to configure as much as possible automatically? [yes]
이 상태에서 yes 든 no 든 반응이 없습니다. control+c로 설치 취소를 누르면 다음과 같이 나옵니다.
^C
dpkg: error processing bio-linux-genquery (–configure):
subprocess post-installation script killed by signal (Interrupt)
dpkg: dependency problems prevent configuration of bio-linux-handlebar:
bio-linux-handlebar depends on bio-linux-genquery; however:
Package bio-linux-genquery is not configured yet.
dpkg: error processing bio-linux-handlebar (–configure):
dependency problems - leaving unconfigured
Errors were encountered while processing:
bio-linux-genquery
bio-linux-handlebar
결국 bio-linux-genquery 및 bio-linux-handlebar가 문제인 것 같습니다.
BioLinux 5의 perl과 cpan 버전이 어찌 되는지요 ? (perl --version)
제 컴의 perl --version은 다음과 같습니다.
ygchai@main:~$ perl --version
This is perl, v5.10.0 built for i486-linux-gnu-thread-multi
Copyright 1987-2007, Larry Wall
Perl may be copied only under the terms of either the Artistic License or the
GNU General Public License, which may be found in the Perl 5 source kit.
Complete documentation for Perl, including FAQ lists, should be found on
this system using "man perl" or "perldoc perl". If you have access to the
Internet, point your browser at http://www.perl.org/, the Perl Home Page.
제컴의 cpan --version은 다음과 같습니다.
ygchai@main:~$ cpan --version
/usr/bin/cpan version [unknown] calling Getopt::Std::getopts (version 1.05 [paranoid]),
running under Perl version 5.10.0.
[Now continuing due to backward compatibility and excessive paranoia.
See ``perldoc Getopt::Std’’ about $Getopt::Std::STANDARD_HELP_VERSION.]
Nothing to install!
vbox로 bio-linux를 돌렸을 때의
perl --version은 다음과 같습니다.
ygchai@ygchai-biolinux[ygchai] perl --version [11:37PM]
This is perl, v5.8.8 built for i486-linux-gnu-thread-multi
Copyright 1987-2006, Larry Wall
Perl may be copied only under the terms of either the Artistic License or the
GNU General Public License, which may be found in the Perl 5 source kit.
Complete documentation for Perl, including FAQ lists, should be found on
this system using "man perl" or "perldoc perl". If you have access to the
Internet, point your browser at http://www.perl.org/, the Perl Home Page.
vbox로 bio-linux를 돌렸을 때
cpan --version을 치면
ygchai@ygchai-biolinux[ygchai] cpan --version [11:38PM]
/usr/bin/cpan version [unknown] calling Getopt::Std::getopts (version 1.05 [paranoid]),
running under Perl version 5.8.8.
[Now continuing due to backward compatibility and excessive paranoia.
See ``perldoc Getopt::Std’’ about $Getopt::Std::STANDARD_HELP_VERSION.]
/home/ygchai/.cpan/CPAN/MyConfig.pm initialized.
CPAN is the world-wide archive of perl resources. It consists of about
100 sites that all replicate the same contents all around the globe.
Many countries have at least one CPAN site already. The resources
found on CPAN are easily accessible with the CPAN.pm module. If you
want to use CPAN.pm, you have to configure it properly.
If you do not want to enter a dialog now, you can answer ‘no’ to this
question and I’ll try to autoconfigure. (Note: you can revisit this
dialog anytime later by typing ‘o conf init’ at the cpan prompt.)
Are you ready for manual configuration? [yes]
이런 상태로 나오지만, no를 치면 그냥 깨끗하게 물러 납니다.
그리고, 다른 프로그램을 설치하더라도, 전혀 방해를 하지 않는 것을 확인하였습니다.
그렇다면, bioperl 설치를 잘못하여서 그런가요?